STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_2188060tRNA ligase. (779 aa)    
Predicted Functional Partners:
C2G38_1454152
KptA family-domain-containing protein.
      
 0.476
C2G38_2133428
Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.
      
 0.475
C2G38_1978248
Kinase-like domain-containing protein.
      
 0.475
C2G38_1964697
tRNA intron endonuclease.
      
 0.475
C2G38_2179674
tRNA-splicing endonuclease subunit sen54 N-term-domain-containing protein.
      
 0.472
C2G38_2241115
tRNA-splicing endonuclease subunit Sen15.
      
 0.467
C2G38_1957510
Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.
      
 0.465
C2G38_2132032
DEAD-domain-containing protein; Belongs to the DEAD box helicase family.
      
 0.454
C2G38_1979454
Beta subunit of phenylalanyl-tRNA synthetase.
      
 0.453
C2G38_2230859
Glucose-regulated protein; Belongs to the heat shock protein 70 family.
      
 0.451
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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