C2G38_2185880 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2185880

F-box domain-containing protein. (340 aa)

Predicted Functional Partners:

C2G38_2034522

0.987

C2G38_394958

0.986

C2G38_2037734

0.986

C2G38_2132100

0.985

C2G38_2086777

0.984

C2G38_1960697

0.982

C2G38_1975166

0.979

C2G38_2122213

0.977

C2G38_745943

0.977

C2G38_1986308

0.977

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1960697	C2G38_1975166	A0A397VJ73	A0A397UVX3	Ribosomal protein S14.	Ribosomal protein rps20.	0.999
C2G38_1960697	C2G38_1986308	A0A397VJ73	A0A397U8B5	Ribosomal protein S14.	30S ribosomal protein S8.	0.996
C2G38_1960697	C2G38_2034522	A0A397VJ73	A0A397VFN5	Ribosomal protein S14.	Putative 40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.999
C2G38_1960697	C2G38_2037734	A0A397VJ73	A0A397V727	Ribosomal protein S14.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
C2G38_1960697	C2G38_2086777	A0A397VJ73	A0A397VAQ7	Ribosomal protein S14.	Ribosomal protein S11-domain-containing protein; Belongs to the universal ribosomal protein uS11 family.	0.999
C2G38_1960697	C2G38_2122213	A0A397VJ73	A0A397U0K5	Ribosomal protein S14.	40S ribosomal protein S22-A; Belongs to the universal ribosomal protein uS8 family.	0.999
C2G38_1960697	C2G38_2132100	A0A397VJ73	A0A397V0A9	Ribosomal protein S14.	40S ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	0.999
C2G38_1960697	C2G38_2185880	A0A397VJ73	A0A397VD78	Ribosomal protein S14.	F-box domain-containing protein.	0.982
C2G38_1960697	C2G38_394958	A0A397VJ73	A0A397UDZ1	Ribosomal protein S14.	Ribosomal protein S17-domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.999
C2G38_1960697	C2G38_745943	A0A397VJ73	A0A397U4T9	Ribosomal protein S14.	Uncharacterized protein.	0.997
C2G38_1975166	C2G38_1960697	A0A397UVX3	A0A397VJ73	Ribosomal protein rps20.	Ribosomal protein S14.	0.999
C2G38_1975166	C2G38_1986308	A0A397UVX3	A0A397U8B5	Ribosomal protein rps20.	30S ribosomal protein S8.	0.997
C2G38_1975166	C2G38_2034522	A0A397UVX3	A0A397VFN5	Ribosomal protein rps20.	Putative 40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.999
C2G38_1975166	C2G38_2037734	A0A397UVX3	A0A397V727	Ribosomal protein rps20.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
C2G38_1975166	C2G38_2086777	A0A397UVX3	A0A397VAQ7	Ribosomal protein rps20.	Ribosomal protein S11-domain-containing protein; Belongs to the universal ribosomal protein uS11 family.	0.999
C2G38_1975166	C2G38_2122213	A0A397UVX3	A0A397U0K5	Ribosomal protein rps20.	40S ribosomal protein S22-A; Belongs to the universal ribosomal protein uS8 family.	0.999
C2G38_1975166	C2G38_2132100	A0A397UVX3	A0A397V0A9	Ribosomal protein rps20.	40S ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	0.999
C2G38_1975166	C2G38_2185880	A0A397UVX3	A0A397VD78	Ribosomal protein rps20.	F-box domain-containing protein.	0.979
C2G38_1975166	C2G38_394958	A0A397UVX3	A0A397UDZ1	Ribosomal protein rps20.	Ribosomal protein S17-domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.999
C2G38_1975166	C2G38_745943	A0A397UVX3	A0A397U4T9	Ribosomal protein rps20.	Uncharacterized protein.	0.997