STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_1966326P-loop containing nucleoside triphosphate hydrolase protein. (620 aa)    
Predicted Functional Partners:
C2G38_2183177
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
   0.612
C2G38_2132577
ATP synthase subunit gamma.
    
   0.610
C2G38_1965730
F1 complex, delta/epsilon subunit of ATPase.
    
   0.608
C2G38_1268315
JmjC domain-containing protein.
    
 
 0.607
C2G38_2159453
Cytochrome oxidase assembly protein.
    
 0.605
C2G38_2192660
Uncharacterized protein.
    
 0.600
C2G38_2092192
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
    
 0.600
C2G38_2290073
TAP42-like protein.
    
 0.600
C2G38_2030181
Uncharacterized protein.
    
 0.600
C2G38_2132599
Uncharacterized protein.
    
   0.597
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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