C2G38_1004235 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_1004235

Elongator subunit Iki1-domain-containing protein. (235 aa)

Predicted Functional Partners:

C2G38_941594

0.985

C2G38_2042530

0.974

C2G38_2097369

0.940

C2G38_2194741

0.901

C2G38_2194738

0.901

C2G38_2037791

0.816

C2G38_2229806

0.784

C2G38_2189219

0.784

C2G38_2242857

0.784

C2G38_2086777

0.773

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1004235	C2G38_2037791	A0A397VIS0	A0A397V7M7	Elongator subunit Iki1-domain-containing protein.	WD40-repeat-containing domain protein.	0.816
C2G38_1004235	C2G38_2042530	A0A397VIS0	A0A397UPY0	Elongator subunit Iki1-domain-containing protein.	IKI3 family-domain-containing protein.	0.974
C2G38_1004235	C2G38_2086777	A0A397VIS0	A0A397VAQ7	Elongator subunit Iki1-domain-containing protein.	Ribosomal protein S11-domain-containing protein; Belongs to the universal ribosomal protein uS11 family.	0.773
C2G38_1004235	C2G38_2097369	A0A397VIS0	A0A397UUF3	Elongator subunit Iki1-domain-containing protein.	Uncharacterized protein.	0.940
C2G38_1004235	C2G38_2189219	A0A397VIS0	A0A397V4Z5	Elongator subunit Iki1-domain-containing protein.	Kinase-like domain-containing protein.	0.784
C2G38_1004235	C2G38_2194738	A0A397VIS0	A0A397V3Q1	Elongator subunit Iki1-domain-containing protein.	Uncharacterized protein.	0.901
C2G38_1004235	C2G38_2194741	A0A397VIS0	A0A397UWT0	Elongator subunit Iki1-domain-containing protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.901
C2G38_1004235	C2G38_2229806	A0A397VIS0	A0A397TVA3	Elongator subunit Iki1-domain-containing protein.	Protein kinase domain-containing protein.	0.784
C2G38_1004235	C2G38_2242857	A0A397VIS0	A0A397VL56	Elongator subunit Iki1-domain-containing protein.	Protein kinase domain-containing protein.	0.784
C2G38_1004235	C2G38_941594	A0A397VIS0	A0A397VK47	Elongator subunit Iki1-domain-containing protein.	Elongator complex protein 4.	0.985
C2G38_2037791	C2G38_1004235	A0A397V7M7	A0A397VIS0	WD40-repeat-containing domain protein.	Elongator subunit Iki1-domain-containing protein.	0.816
C2G38_2042530	C2G38_1004235	A0A397UPY0	A0A397VIS0	IKI3 family-domain-containing protein.	Elongator subunit Iki1-domain-containing protein.	0.974
C2G38_2042530	C2G38_2097369	A0A397UPY0	A0A397UUF3	IKI3 family-domain-containing protein.	Uncharacterized protein.	0.764
C2G38_2042530	C2G38_2194738	A0A397UPY0	A0A397V3Q1	IKI3 family-domain-containing protein.	Uncharacterized protein.	0.978
C2G38_2042530	C2G38_2194741	A0A397UPY0	A0A397UWT0	IKI3 family-domain-containing protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.978
C2G38_2042530	C2G38_941594	A0A397UPY0	A0A397VK47	IKI3 family-domain-containing protein.	Elongator complex protein 4.	0.996
C2G38_2086777	C2G38_1004235	A0A397VAQ7	A0A397VIS0	Ribosomal protein S11-domain-containing protein; Belongs to the universal ribosomal protein uS11 family.	Elongator subunit Iki1-domain-containing protein.	0.773
C2G38_2097369	C2G38_1004235	A0A397UUF3	A0A397VIS0	Uncharacterized protein.	Elongator subunit Iki1-domain-containing protein.	0.940
C2G38_2097369	C2G38_2042530	A0A397UUF3	A0A397UPY0	Uncharacterized protein.	IKI3 family-domain-containing protein.	0.764
C2G38_2097369	C2G38_2194738	A0A397UUF3	A0A397V3Q1	Uncharacterized protein.	Uncharacterized protein.	0.653