C2G38_1959773 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_1959773

DRIM domain-containing protein. (2785 aa)

Predicted Functional Partners:

C2G38_2127064

0.999

C2G38_2222685

0.999

C2G38_2114632

0.999

C2G38_2022090

0.999

NAT10

0.999

C2G38_1971193

0.999

C2G38_2017649

0.999

C2G38_2000933

0.999

C2G38_2131791

0.999

C2G38_1960466

0.999

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1959773	C2G38_1960466	A0A397VMX1	A0A397VL26	DRIM domain-containing protein.	Nucleolar protein 14.	0.999
C2G38_1959773	C2G38_1971193	A0A397VMX1	A0A397UZZ8	DRIM domain-containing protein.	Uncharacterized protein.	0.999
C2G38_1959773	C2G38_2000933	A0A397VMX1	A0A397V6A9	DRIM domain-containing protein.	Uncharacterized protein.	0.999
C2G38_1959773	C2G38_2017649	A0A397VMX1	A0A397V1B0	DRIM domain-containing protein.	Utp21 specific WD40 associated putative domain-containing protein.	0.999
C2G38_1959773	C2G38_2022090	A0A397VMX1	A0A397UDN3	DRIM domain-containing protein.	WD40-repeat-containing domain protein.	0.999
C2G38_1959773	C2G38_2114632	A0A397VMX1	A0A397UBV8	DRIM domain-containing protein.	WD40-repeat-containing domain protein.	0.999
C2G38_1959773	C2G38_2127064	A0A397VMX1	A0A397TXX2	DRIM domain-containing protein.	WD40-repeat-containing domain protein.	0.999
C2G38_1959773	C2G38_2131791	A0A397VMX1	A0A397VH49	DRIM domain-containing protein.	WD40 repeat-like protein.	0.999
C2G38_1959773	C2G38_2222685	A0A397VMX1	A0A397U274	DRIM domain-containing protein.	U3 small nucleolar RNA-associated protein 22.	0.999
C2G38_1959773	NAT10	A0A397VMX1	A0A397UPL8	DRIM domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.999
C2G38_1960466	C2G38_1959773	A0A397VL26	A0A397VMX1	Nucleolar protein 14.	DRIM domain-containing protein.	0.999
C2G38_1960466	C2G38_1971193	A0A397VL26	A0A397UZZ8	Nucleolar protein 14.	Uncharacterized protein.	0.999
C2G38_1960466	C2G38_2000933	A0A397VL26	A0A397V6A9	Nucleolar protein 14.	Uncharacterized protein.	0.999
C2G38_1960466	C2G38_2017649	A0A397VL26	A0A397V1B0	Nucleolar protein 14.	Utp21 specific WD40 associated putative domain-containing protein.	0.996
C2G38_1960466	C2G38_2022090	A0A397VL26	A0A397UDN3	Nucleolar protein 14.	WD40-repeat-containing domain protein.	0.999
C2G38_1960466	C2G38_2114632	A0A397VL26	A0A397UBV8	Nucleolar protein 14.	WD40-repeat-containing domain protein.	0.998
C2G38_1960466	C2G38_2127064	A0A397VL26	A0A397TXX2	Nucleolar protein 14.	WD40-repeat-containing domain protein.	0.999
C2G38_1960466	C2G38_2131791	A0A397VL26	A0A397VH49	Nucleolar protein 14.	WD40 repeat-like protein.	0.998
C2G38_1960466	C2G38_2222685	A0A397VL26	A0A397U274	Nucleolar protein 14.	U3 small nucleolar RNA-associated protein 22.	0.999
C2G38_1960466	NAT10	A0A397VL26	A0A397UPL8	Nucleolar protein 14.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.999