C2G38_1905779 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_1905779

Male sterility protein. (189 aa)

Predicted Functional Partners:

C2G38_2217484

0.878

C2G38_2195331

0.873

C2G38_1892926

0.844

C2G38_2219473

0.844

C2G38_2002064

0.723

C2G38_2318566

0.624

C2G38_2172132

0.624

C2G38_1893904

0.616

C2G38_2237557

0.587

C2G38_2295874

0.587

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1892926	C2G38_1893904	A0A397TRS2	A0A397V8H6	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Glycerol:H+ symporter; Belongs to the membrane-bound acyltransferase family.	0.985
C2G38_1892926	C2G38_1905779	A0A397TRS2	A0A397VNG4	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Male sterility protein.	0.844
C2G38_1892926	C2G38_2002064	A0A397TRS2	A0A397V3P3	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Putative 4'-phosphopantetheinyl transferase SFP.	0.828
C2G38_1892926	C2G38_2172132	A0A397TRS2	A0A397VMQ5	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Thiolase-like protein.	0.594
C2G38_1892926	C2G38_2237557	A0A397TRS2	A0A397TT09	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Beta-ketoacyl synthase.	0.951
C2G38_1892926	C2G38_2295874	A0A397TRS2	A0A397TTL3	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Thiolase-like protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.951
C2G38_1892926	C2G38_2318566	A0A397TRS2	A0A397TPB2	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Beta-ketoacyl synthase.	0.594
C2G38_1893904	C2G38_1892926	A0A397V8H6	A0A397TRS2	Glycerol:H+ symporter; Belongs to the membrane-bound acyltransferase family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.985
C2G38_1893904	C2G38_1905779	A0A397V8H6	A0A397VNG4	Glycerol:H+ symporter; Belongs to the membrane-bound acyltransferase family.	Male sterility protein.	0.616
C2G38_1893904	C2G38_2219473	A0A397V8H6	A0A397U9V4	Glycerol:H+ symporter; Belongs to the membrane-bound acyltransferase family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.985
C2G38_1893904	C2G38_2237557	A0A397V8H6	A0A397TT09	Glycerol:H+ symporter; Belongs to the membrane-bound acyltransferase family.	Beta-ketoacyl synthase.	0.652
C2G38_1893904	C2G38_2295874	A0A397V8H6	A0A397TTL3	Glycerol:H+ symporter; Belongs to the membrane-bound acyltransferase family.	Thiolase-like protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.652
C2G38_1905779	C2G38_1892926	A0A397VNG4	A0A397TRS2	Male sterility protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.844
C2G38_1905779	C2G38_1893904	A0A397VNG4	A0A397V8H6	Male sterility protein.	Glycerol:H+ symporter; Belongs to the membrane-bound acyltransferase family.	0.616
C2G38_1905779	C2G38_2002064	A0A397VNG4	A0A397V3P3	Male sterility protein.	Putative 4'-phosphopantetheinyl transferase SFP.	0.723
C2G38_1905779	C2G38_2172132	A0A397VNG4	A0A397VMQ5	Male sterility protein.	Thiolase-like protein.	0.624
C2G38_1905779	C2G38_2195331	A0A397VNG4	A0A397UYB0	Male sterility protein.	Histidine biosynthesis trifunctional protein.	0.873
C2G38_1905779	C2G38_2217484	A0A397VNG4	A0A397U7T6	Male sterility protein.	Tryptophan synthase.	0.878
C2G38_1905779	C2G38_2219473	A0A397VNG4	A0A397U9V4	Male sterility protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.844
C2G38_1905779	C2G38_2237557	A0A397VNG4	A0A397TT09	Male sterility protein.	Beta-ketoacyl synthase.	0.587