C2G38_1997663 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_1997663

P-loop containing nucleoside triphosphate hydrolase protein. (211 aa)

Predicted Functional Partners:

C2G38_1982616

0.867

C2G38_1242377

0.862

C2G38_2245822

0.843

C2G38_2189546

0.794

C2G38_2120856

0.778

C2G38_2256482

0.760

C2G38_2326352

0.760

C2G38_2131999

0.760

C2G38_2164197

0.760

C2G38_2027015

0.760

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1242377	C2G38_1997663	A0A397VBG9	A0A397VQQ8	Rab3 GTPase-activating protein catalytic subunit-domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.862
C2G38_1242377	C2G38_2027015	A0A397VBG9	A0A397WBM9	Rab3 GTPase-activating protein catalytic subunit-domain-containing protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.602
C2G38_1242377	C2G38_2120856	A0A397VBG9	A0A397UAK9	Rab3 GTPase-activating protein catalytic subunit-domain-containing protein.	Ras family-domain-containing protein.	0.748
C2G38_1242377	C2G38_2131999	A0A397VBG9	A0A397VCJ0	Rab3 GTPase-activating protein catalytic subunit-domain-containing protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.602
C2G38_1242377	C2G38_2164197	A0A397VBG9	A0A397VWC0	Rab3 GTPase-activating protein catalytic subunit-domain-containing protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.602
C2G38_1242377	C2G38_2189546	A0A397VBG9	A0A397V2B2	Rab3 GTPase-activating protein catalytic subunit-domain-containing protein.	GDP dissociation inhibitor.	0.745
C2G38_1242377	C2G38_2245822	A0A397VBG9	A0A397V8Y1	Rab3 GTPase-activating protein catalytic subunit-domain-containing protein.	Rab3 GTPase-activating protein regulatory subunit N-terminus-domain-containing protein.	0.999
C2G38_1242377	C2G38_2256482	A0A397VBG9	A0A397TWQ8	Rab3 GTPase-activating protein catalytic subunit-domain-containing protein.	GDP dissociation inhibitor-domain-containing protein.	0.602
C2G38_1242377	C2G38_2326352	A0A397VBG9	A0A397UTV0	Rab3 GTPase-activating protein catalytic subunit-domain-containing protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.602
C2G38_1982616	C2G38_1997663	A0A397UHL5	A0A397VQQ8	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	P-loop containing nucleoside triphosphate hydrolase protein.	0.867
C2G38_1997663	C2G38_1242377	A0A397VQQ8	A0A397VBG9	P-loop containing nucleoside triphosphate hydrolase protein.	Rab3 GTPase-activating protein catalytic subunit-domain-containing protein.	0.862
C2G38_1997663	C2G38_1982616	A0A397VQQ8	A0A397UHL5	P-loop containing nucleoside triphosphate hydrolase protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.867
C2G38_1997663	C2G38_2027015	A0A397VQQ8	A0A397WBM9	P-loop containing nucleoside triphosphate hydrolase protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.760
C2G38_1997663	C2G38_2120856	A0A397VQQ8	A0A397UAK9	P-loop containing nucleoside triphosphate hydrolase protein.	Ras family-domain-containing protein.	0.778
C2G38_1997663	C2G38_2131999	A0A397VQQ8	A0A397VCJ0	P-loop containing nucleoside triphosphate hydrolase protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.760
C2G38_1997663	C2G38_2164197	A0A397VQQ8	A0A397VWC0	P-loop containing nucleoside triphosphate hydrolase protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.760
C2G38_1997663	C2G38_2189546	A0A397VQQ8	A0A397V2B2	P-loop containing nucleoside triphosphate hydrolase protein.	GDP dissociation inhibitor.	0.794
C2G38_1997663	C2G38_2245822	A0A397VQQ8	A0A397V8Y1	P-loop containing nucleoside triphosphate hydrolase protein.	Rab3 GTPase-activating protein regulatory subunit N-terminus-domain-containing protein.	0.843
C2G38_1997663	C2G38_2256482	A0A397VQQ8	A0A397TWQ8	P-loop containing nucleoside triphosphate hydrolase protein.	GDP dissociation inhibitor-domain-containing protein.	0.760
C2G38_1997663	C2G38_2326352	A0A397VQQ8	A0A397UTV0	P-loop containing nucleoside triphosphate hydrolase protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.760