C2G38_2242280 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2242280

Major facilitator superfamily domain-containing protein. (539 aa)

Predicted Functional Partners:

C2G38_2048342

0.584

C2G38_135219

0.584

C2G38_2127373

0.480

C2G38_1966492

0.475

C2G38_2048221

0.423

C2G38_2005775

0.423

C2G38_2135159

0.423

C2G38_2030687

0.423

C2G38_2256404

0.415

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_135219	C2G38_1966492	A0A397ULD6	A0A397V8A8	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	Pyridoxal phosphate-dependent transferase.	0.780
C2G38_135219	C2G38_2048342	A0A397ULD6	A0A397U2U9	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	0.615
C2G38_135219	C2G38_2127373	A0A397ULD6	A0A397U3B0	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	Flavodoxin-like domain-containing protein.	0.705
C2G38_135219	C2G38_2242280	A0A397ULD6	A0A397VVI0	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	Major facilitator superfamily domain-containing protein.	0.584
C2G38_1966492	C2G38_135219	A0A397V8A8	A0A397ULD6	Pyridoxal phosphate-dependent transferase.	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	0.780
C2G38_1966492	C2G38_2048342	A0A397V8A8	A0A397U2U9	Pyridoxal phosphate-dependent transferase.	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	0.780
C2G38_1966492	C2G38_2242280	A0A397V8A8	A0A397VVI0	Pyridoxal phosphate-dependent transferase.	Major facilitator superfamily domain-containing protein.	0.475
C2G38_2005775	C2G38_2242280	A0A397UJQ5	A0A397VVI0	Glyceraldehyde-3-phosphate dehydrogenase.	Major facilitator superfamily domain-containing protein.	0.423
C2G38_2030687	C2G38_2242280	A0A397W3F4	A0A397VVI0	Glyceraldehyde-3-phosphate dehydrogenase.	Major facilitator superfamily domain-containing protein.	0.423
C2G38_2048221	C2G38_2242280	A0A397UBJ9	A0A397VVI0	Glyceraldehyde-3-phosphate dehydrogenase 3; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	Major facilitator superfamily domain-containing protein.	0.423
C2G38_2048342	C2G38_135219	A0A397U2U9	A0A397ULD6	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	0.615
C2G38_2048342	C2G38_1966492	A0A397U2U9	A0A397V8A8	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	Pyridoxal phosphate-dependent transferase.	0.780
C2G38_2048342	C2G38_2127373	A0A397U2U9	A0A397U3B0	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	Flavodoxin-like domain-containing protein.	0.705
C2G38_2048342	C2G38_2242280	A0A397U2U9	A0A397VVI0	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	Major facilitator superfamily domain-containing protein.	0.584
C2G38_2127373	C2G38_135219	A0A397U3B0	A0A397ULD6	Flavodoxin-like domain-containing protein.	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	0.705
C2G38_2127373	C2G38_2048342	A0A397U3B0	A0A397U2U9	Flavodoxin-like domain-containing protein.	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	0.705
C2G38_2127373	C2G38_2242280	A0A397U3B0	A0A397VVI0	Flavodoxin-like domain-containing protein.	Major facilitator superfamily domain-containing protein.	0.480
C2G38_2135159	C2G38_2242280	A0A397UQ06	A0A397VVI0	Glyceraldehyde-3-phosphate dehydrogenase 2; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	Major facilitator superfamily domain-containing protein.	0.423
C2G38_2242280	C2G38_135219	A0A397VVI0	A0A397ULD6	Major facilitator superfamily domain-containing protein.	FMN-dependent dehydrogenase-domain-containing protein; Belongs to the cytochrome b5 family.	0.584
C2G38_2242280	C2G38_1966492	A0A397VVI0	A0A397V8A8	Major facilitator superfamily domain-containing protein.	Pyridoxal phosphate-dependent transferase.	0.475