hoxF protein (Microcystis aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

hoxF

Bidirectional hydrogenase diaphorase subunit. (535 aa)

Predicted Functional Partners:

hoxE

0.999

MAE_01215

0.999

MAE_01950

0.999

ndhD1

0.999

MAE_06730

0.999

ndhC

0.999

ndhK

0.999

ndhJ

0.999

ndhD3

0.999

ndhD2

0.999

Your Current Organism:

Microcystis aeruginosa

NCBI taxonomy Id: 449447
Other names: M. aeruginosa NIES-843, Microcystis aeruginosa NIES-843

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MAE_01215	MAE_06730	MAE_01215	MAE_06730	4Fe-4S type iron-sulfur protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Chaperon-like protein for quinone binding in photosystem II.	0.936
MAE_01215	hoxE	MAE_01215	MAE_01080	4Fe-4S type iron-sulfur protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Putative bidirectional hydrogenase diaphorase subunit.	0.851
MAE_01215	hoxF	MAE_01215	MAE_01090	4Fe-4S type iron-sulfur protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Bidirectional hydrogenase diaphorase subunit.	0.999
MAE_01215	ndhC	MAE_01215	MAE_11760	4Fe-4S type iron-sulfur protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	NADH dehydrogenase subunit 3; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	0.959
MAE_01215	ndhD1	MAE_01215	MAE_06530	4Fe-4S type iron-sulfur protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	NADH dehydrogenase subunit 4; NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family.	0.790
MAE_01215	ndhD2	MAE_01215	MAE_42210	4Fe-4S type iron-sulfur protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	NADH dehydrogenase subunit 4; NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family.	0.790
MAE_01215	ndhD3	MAE_01215	MAE_15140	4Fe-4S type iron-sulfur protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	NADH dehydrogenase subunit 4; Involved in low CO2-inducible, high affinity CO2 uptake.	0.790
MAE_01215	ndhJ	MAE_01215	MAE_11780	4Fe-4S type iron-sulfur protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	NADH dehydrogenase subunit; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	0.966
MAE_01215	ndhK	MAE_01215	MAE_11770	4Fe-4S type iron-sulfur protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	NADH dehydrogenase subunit; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration; Belongs to the complex I 20 kDa subunit family.	0.966
MAE_01950	MAE_06730	MAE_01950	MAE_06730	Iron-sulfur cluster binding protein homolog.	Chaperon-like protein for quinone binding in photosystem II.	0.936
MAE_01950	hoxE	MAE_01950	MAE_01080	Iron-sulfur cluster binding protein homolog.	Putative bidirectional hydrogenase diaphorase subunit.	0.851
MAE_01950	hoxF	MAE_01950	MAE_01090	Iron-sulfur cluster binding protein homolog.	Bidirectional hydrogenase diaphorase subunit.	0.999
MAE_01950	ndhC	MAE_01950	MAE_11760	Iron-sulfur cluster binding protein homolog.	NADH dehydrogenase subunit 3; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	0.959
MAE_01950	ndhD1	MAE_01950	MAE_06530	Iron-sulfur cluster binding protein homolog.	NADH dehydrogenase subunit 4; NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family.	0.790
MAE_01950	ndhD2	MAE_01950	MAE_42210	Iron-sulfur cluster binding protein homolog.	NADH dehydrogenase subunit 4; NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family.	0.790
MAE_01950	ndhD3	MAE_01950	MAE_15140	Iron-sulfur cluster binding protein homolog.	NADH dehydrogenase subunit 4; Involved in low CO2-inducible, high affinity CO2 uptake.	0.790
MAE_01950	ndhJ	MAE_01950	MAE_11780	Iron-sulfur cluster binding protein homolog.	NADH dehydrogenase subunit; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.	0.966
MAE_01950	ndhK	MAE_01950	MAE_11770	Iron-sulfur cluster binding protein homolog.	NADH dehydrogenase subunit; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration; Belongs to the complex I 20 kDa subunit family.	0.966
MAE_06730	MAE_01215	MAE_06730	MAE_01215	Chaperon-like protein for quinone binding in photosystem II.	4Fe-4S type iron-sulfur protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	0.936
MAE_06730	MAE_01950	MAE_06730	MAE_01950	Chaperon-like protein for quinone binding in photosystem II.	Iron-sulfur cluster binding protein homolog.	0.936