pilB protein (Microcystis aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pilB

Pilus biogenesis protein; Homologous to general secretion pathway protein E. (671 aa)

Predicted Functional Partners:

pilC

0.997

pilM

0.965

pilA-3

0.961

MAE_57525

0.870

pilQ

0.858

comE

0.856

pilN

0.789

pilT

0.774

pilO

0.765

pilA

0.741

Your Current Organism:

Microcystis aeruginosa

NCBI taxonomy Id: 449447
Other names: M. aeruginosa NIES-843, Microcystis aeruginosa NIES-843

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MAE_57525	comE	MAE_57525	MAE_58670	Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Competence protein.	0.829
MAE_57525	pilA	MAE_57525	MAE_35720	Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type 4 pilin-like protein.	0.506
MAE_57525	pilA-3	MAE_57525	MAE_46550	Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Pilin polypeptide.	0.872
MAE_57525	pilB	MAE_57525	MAE_04090	Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Pilus biogenesis protein; Homologous to general secretion pathway protein E.	0.870
MAE_57525	pilC	MAE_57525	MAE_04110	Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Pilin biogenesis protein; Required for twitching motility.	0.942
MAE_57525	pilM	MAE_57525	MAE_09710	Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV pilus assembly protein.	0.865
MAE_57525	pilN	MAE_57525	MAE_09720	Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV pilus assembly protein.	0.411
MAE_57525	pilO	MAE_57525	MAE_09730	Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV pilus assembly protein.	0.404
MAE_57525	pilQ	MAE_57525	MAE_09740	Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV pilus assembly protein.	0.554
MAE_57525	pilT	MAE_57525	MAE_04100	Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Twitching motility protein.	0.871
comE	MAE_57525	MAE_58670	MAE_57525	Competence protein.	Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.829
comE	pilA	MAE_58670	MAE_35720	Competence protein.	Type 4 pilin-like protein.	0.667
comE	pilA-3	MAE_58670	MAE_46550	Competence protein.	Pilin polypeptide.	0.747
comE	pilB	MAE_58670	MAE_04090	Competence protein.	Pilus biogenesis protein; Homologous to general secretion pathway protein E.	0.856
comE	pilC	MAE_58670	MAE_04110	Competence protein.	Pilin biogenesis protein; Required for twitching motility.	0.911
comE	pilM	MAE_58670	MAE_09710	Competence protein.	Type IV pilus assembly protein.	0.835
comE	pilN	MAE_58670	MAE_09720	Competence protein.	Type IV pilus assembly protein.	0.842
comE	pilO	MAE_58670	MAE_09730	Competence protein.	Type IV pilus assembly protein.	0.787
comE	pilQ	MAE_58670	MAE_09740	Competence protein.	Type IV pilus assembly protein.	0.788
comE	pilT	MAE_58670	MAE_04100	Competence protein.	Twitching motility protein.	0.779