STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrtALight repressed protein A homolog; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (199 aa)    
Predicted Functional Partners:
rps21
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.961
rpl15
50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
 
 0.959
rps20
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
   0.958
rpl34
50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.957
rpl27
50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.957
rps9
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.957
rpl29
50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.956
rpl3
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
   0.954
rpl9
50S ribosomal protein L9; Binds to the 23S rRNA.
  
   0.953
rps5
30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.953
Your Current Organism:
Microcystis aeruginosa
NCBI taxonomy Id: 449447
Other names: M. aeruginosa NIES-843, Microcystis aeruginosa NIES-843
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.