gvpW protein (Microcystis aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gvpW

Gas vesicle protein. (227 aa)

Predicted Functional Partners:

gvpV

0.847

gvpN

0.614

gvpC

0.586

gvpK

0.586

gvpAI

0.581

gvpAII

0.581

gvpAIII

0.581

gvpG

0.579

gvpF

0.577

gvpJ

0.575

Your Current Organism:

Microcystis aeruginosa

NCBI taxonomy Id: 449447
Other names: M. aeruginosa NIES-843, Microcystis aeruginosa NIES-843

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
gvpAI	gvpAII	MAE_37580	MAE_37590	Gas vesicle protein GvpAI; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.	Gas vesicle protein GvpAII.	0.400
gvpAI	gvpC	MAE_37580	MAE_37620	Gas vesicle protein GvpAI; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.	Gas vesicle structural protein.	0.682
gvpAI	gvpF	MAE_37580	MAE_37670	Gas vesicle protein GvpAI; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.	Gas vesicle protein.	0.920
gvpAI	gvpG	MAE_37580	MAE_37680	Gas vesicle protein GvpAI; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.	Gas vesicle protein.	0.606
gvpAI	gvpJ	MAE_37580	MAE_37640	Gas vesicle protein GvpAI; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.	Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.	0.916
gvpAI	gvpK	MAE_37580	MAE_37660	Gas vesicle protein GvpAI; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.	Gas vesicle protein.	0.912
gvpAI	gvpN	MAE_37580	MAE_37630	Gas vesicle protein GvpAI; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.	Gas vesicle protein.	0.926
gvpAI	gvpV	MAE_37580	MAE_37690	Gas vesicle protein GvpAI; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.	Gas vesicle protein.	0.577
gvpAI	gvpW	MAE_37580	MAE_37700	Gas vesicle protein GvpAI; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.	Gas vesicle protein.	0.581
gvpAII	gvpAI	MAE_37590	MAE_37580	Gas vesicle protein GvpAII.	Gas vesicle protein GvpAI; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.	0.400
gvpAII	gvpAIII	MAE_37590	MAE_37600	Gas vesicle protein GvpAII.	Gas vesicle protein GvpAIII.	0.407
gvpAII	gvpC	MAE_37590	MAE_37620	Gas vesicle protein GvpAII.	Gas vesicle structural protein.	0.586
gvpAII	gvpF	MAE_37590	MAE_37670	Gas vesicle protein GvpAII.	Gas vesicle protein.	0.907
gvpAII	gvpG	MAE_37590	MAE_37680	Gas vesicle protein GvpAII.	Gas vesicle protein.	0.605
gvpAII	gvpJ	MAE_37590	MAE_37640	Gas vesicle protein GvpAII.	Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.	0.904
gvpAII	gvpK	MAE_37590	MAE_37660	Gas vesicle protein GvpAII.	Gas vesicle protein.	0.912
gvpAII	gvpN	MAE_37590	MAE_37630	Gas vesicle protein GvpAII.	Gas vesicle protein.	0.897
gvpAII	gvpV	MAE_37590	MAE_37690	Gas vesicle protein GvpAII.	Gas vesicle protein.	0.577
gvpAII	gvpW	MAE_37590	MAE_37700	Gas vesicle protein GvpAII.	Gas vesicle protein.	0.581
gvpAIII	gvpAII	MAE_37600	MAE_37590	Gas vesicle protein GvpAIII.	Gas vesicle protein GvpAII.	0.407