STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO02817.1Hypothetical protein. (336 aa)    
Predicted Functional Partners:
KRO02811.1
Hypothetical protein.
 
     0.777
rny
Phosphodiesterase; Endoribonuclease that initiates mRNA decay.
  
 
 0.771
KRO02816.1
Dipeptidase A.
       0.765
KRN98198.1
MarR family transcriptional regulator.
  
     0.745
KRO01108.1
Hypothetical protein.
 
     0.703
KRO00682.1
Hypothetical protein.
  
    0.688
KRO02036.1
CAAX amino protease.
 
    0.648
KRN99532.1
Hypothetical protein.
  
     0.634
KRO02736.1
Hypothetical protein.
  
     0.632
KRO01034.1
Hypothetical protein.
  
   
 0.632
Your Current Organism:
Lactobacillus pobuzihii
NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.