KRO01289.1 protein (Lactobacillus pobuzihii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRO01289.1

PTS permease. (145 aa)

Predicted Functional Partners:

KRO01303.1

0.971

KRO01290.1

0.970

KRO01291.1

0.970

KRO01288.1

0.946

KRO01299.1

0.932

KRN99180.1

0.932

KRN95905.1

0.930

KRO01302.1

0.929

KRO01193.1

0.919

KRN98799.1

0.916

Your Current Organism:

Lactobacillus pobuzihii

NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRN95905.1	KRN98799.1	IV66_GL000929	IV66_GL001783	PTS system mannose fructose sorbose family transporter subunit IID.	Phosphocarrier protein HPr.	0.743
KRN95905.1	KRO01193.1	IV66_GL000929	IV66_GL000726	PTS system mannose fructose sorbose family transporter subunit IID.	PTS family mannose fructose sorbose porter component IID.	0.654
KRN95905.1	KRO01288.1	IV66_GL000929	IV66_GL000475	PTS system mannose fructose sorbose family transporter subunit IID.	Hypothetical protein.	0.887
KRN95905.1	KRO01289.1	IV66_GL000929	IV66_GL000476	PTS system mannose fructose sorbose family transporter subunit IID.	PTS permease.	0.930
KRN95905.1	KRO01290.1	IV66_GL000929	IV66_GL000477	PTS system mannose fructose sorbose family transporter subunit IID.	PTS system, mannose-specific IIC component.	0.977
KRN95905.1	KRO01302.1	IV66_GL000929	IV66_GL000490	PTS system mannose fructose sorbose family transporter subunit IID.	Phosphotransferase system pts, sorbose-specific iic subunit.	0.970
KRN98799.1	KRN95905.1	IV66_GL001783	IV66_GL000929	Phosphocarrier protein HPr.	PTS system mannose fructose sorbose family transporter subunit IID.	0.743
KRN98799.1	KRN99180.1	IV66_GL001783	IV66_GL001668	Phosphocarrier protein HPr.	PTS system mannose fructose sorbose family IID component.	0.743
KRN98799.1	KRO01193.1	IV66_GL001783	IV66_GL000726	Phosphocarrier protein HPr.	PTS family mannose fructose sorbose porter component IID.	0.803
KRN98799.1	KRO01288.1	IV66_GL001783	IV66_GL000475	Phosphocarrier protein HPr.	Hypothetical protein.	0.924
KRN98799.1	KRO01289.1	IV66_GL001783	IV66_GL000476	Phosphocarrier protein HPr.	PTS permease.	0.916
KRN98799.1	KRO01290.1	IV66_GL001783	IV66_GL000477	Phosphocarrier protein HPr.	PTS system, mannose-specific IIC component.	0.767
KRN98799.1	KRO01291.1	IV66_GL001783	IV66_GL000478	Phosphocarrier protein HPr.	PTS system, mannose-specific IID component.	0.721
KRN98799.1	KRO01299.1	IV66_GL001783	IV66_GL000487	Phosphocarrier protein HPr.	Pts system transporter subunit iid.	0.743
KRN98799.1	KRO01302.1	IV66_GL001783	IV66_GL000490	Phosphocarrier protein HPr.	Phosphotransferase system pts, sorbose-specific iic subunit.	0.767
KRN98799.1	KRO01303.1	IV66_GL001783	IV66_GL000491	Phosphocarrier protein HPr.	PTS system, mannose-specific IID component.	0.914
KRN99180.1	KRN98799.1	IV66_GL001668	IV66_GL001783	PTS system mannose fructose sorbose family IID component.	Phosphocarrier protein HPr.	0.743
KRN99180.1	KRO01193.1	IV66_GL001668	IV66_GL000726	PTS system mannose fructose sorbose family IID component.	PTS family mannose fructose sorbose porter component IID.	0.651
KRN99180.1	KRO01288.1	IV66_GL001668	IV66_GL000475	PTS system mannose fructose sorbose family IID component.	Hypothetical protein.	0.810
KRN99180.1	KRO01289.1	IV66_GL001668	IV66_GL000476	PTS system mannose fructose sorbose family IID component.	PTS permease.	0.932