STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN96767.1Oligopeptide transport ATP-binding protein. (325 aa)    
Predicted Functional Partners:
KRN96764.1
Oligopeptide transport system permease.
 
 0.999
KRN96765.1
Peptide nickel transport system permease protein.
 
 0.999
KRN96766.1
Oligopeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
0.995
KRN96763.1
Oligopeptide-binding protein.
 
 0.964
KRN95850.1
Oligopeptide ABC transporter binding protein.
 
 0.946
KRN96796.1
Oligopeptide ABC superfamily ATP binding cassette transporter, binding protein.
 
 0.944
KRN98080.1
ABC transporter periplasmic protein.
 
 0.939
KRO01650.1
ABC transporter periplasmic protein.
 
 0.930
ecfT
ABC transporter permease; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.835
KRN95622.1
ABC transporter permease.
  
 0.828
Your Current Organism:
Lactobacillus pobuzihii
NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301
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