STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN95799.1mtsA protein; Belongs to the bacterial solute-binding protein 9 family. (317 aa)    
Predicted Functional Partners:
KRN95798.1
Manganese abc transporter permease protein.
 
 0.999
KRN95797.1
Manganese abc transporter atp binding protein.
 
 
 0.975
KRO01406.1
ABC transporter permease.
 
 
 0.933
KRO01405.1
ABC transporter ATP-binding protein.
 
 
 0.929
KRN98287.1
Iron dependent repressor.
  
 
 0.601
KRN95796.1
Hypothetical protein.
       0.584
KRN95592.1
Mn-dependent transcriptional regulator.
  
 
 0.554
KRN98523.1
Mn-dependent transcriptional regulator.
  
 
 0.554
KRN95593.1
NRAMP family Mn2+ Fe2+ transporter-like protein.
  
  
 0.530
KRN98524.1
NRAMP family Mn2+ Fe2+ transporter-like protein.
  
  
 0.530
Your Current Organism:
Lactobacillus pobuzihii
NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301
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