STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN95955.1Ubiquinone biosynthesis protein. (553 aa)    
Predicted Functional Partners:
KRO02593.1
Hypothetical protein.
  
 
 0.776
KRO02728.1
Hypothetical protein.
     0.735
KRN95954.1
Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.
 
     0.512
KRN95613.1
Lipopolysaccharide biosynthesis glycosyltransferase.
  
 
 0.480
KRN95648.1
Exopolysaccharide glycosyltransferase.
  
 
 0.480
KRO01695.1
General stress protein A.
  
 
 0.480
KRN99980.1
CRP FNR family transcriptional regulator.
  
 
 0.471
KRN96510.1
Hypothetical protein.
  
 
 0.446
KRN96804.1
UDP-galactose--lipooligosaccharide galactosyltransferase.
  
 
 0.439
KRN99171.1
CDP-glycerol glycerophosphotransferase.
  
 
 0.439
Your Current Organism:
Lactobacillus pobuzihii
NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301
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