Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN95648.1Exopolysaccharide glycosyltransferase. (294 aa)    
Predicted Functional Partners:
KRN98797.1
Glycosyltransferase.
 
 
 0.780
KRN95649.1
Hypothetical protein.
       0.773
KRN95644.1
Glycine betaine L-proline ABC transporter ATPase.
 
     0.625
KRN95646.1
Glycine betaine carnitine choline ABC transporter substrate-binding protein.
       0.578
KRN95647.1
Binding-protein-dependent transport systems inner membrane component.
       0.578
KRN95645.1
Binding-protein-dependent transport systems inner membrane component.
       0.562
KRN95611.1
Short-chain dehydrogenase oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.487
KRN95955.1
Ubiquinone biosynthesis protein.
  
 
 0.461
Your Current Organism:
Lactobacillus pobuzihii
NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301
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