STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN99808.1LacI family transcription regulator. (325 aa)    
Predicted Functional Partners:
KRN99812.1
Sugar-specific permease.
 
 
 0.895
KRN98799.1
Phosphocarrier protein HPr.
   
 
 0.813
KRN95941.1
Trehalose PTS II ABC.
  
 
 0.809
KRN95942.1
PTS system beta-glucoside-specific EIIBCA component.
 
 
 0.809
KRN99535.1
PTS system sucrose-specific transporter subunit IIABC.
  
 
 0.809
KRN98443.1
Beta-glucosides PTS, EIIBCA.
 
 
 0.809
KRO02727.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.754
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
   0.711
pheT
phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
   0.672
metG
methionyl-tRNA synthetase protein secretion chaperonin CsaA; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
    
   0.671
Your Current Organism:
Lactobacillus pobuzihii
NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.