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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN99815.1Amino acid permease. (480 aa)    
Predicted Functional Partners:
KRN99816.1
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.765
KRO01191.1
Oligo-1,6-glucosidase.
   
 0.739
KRN95819.1
Oligo-1,6-glucosidase.
   
 0.739
KRN95906.1
Oligo-1,6-glucosidase (Sucrase-isomaltase).
   
 0.739
KRN95922.1
Alpha amylase, catalytic domain containing protein.
   
 0.739
KRN95923.1
Neopullulanase cyclomaltodextrinase maltogenic alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
   
 0.739
KRN95939.1
Trehalose 6-P hydrolase.
   
 0.739
KRO02025.1
Neopullulanase cyclomaltodextrinase maltogenic alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
   
 0.739
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
   
   0.547
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
 0.508
Your Current Organism:
Lactobacillus pobuzihii
NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301
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