Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN99508.1Hypothetical protein. (131 aa)    
Predicted Functional Partners:
KRN99509.1
Hypothetical protein.
       0.801
KRN99510.1
Hypothetical protein.
       0.801
KRN99512.1
Hypothetical protein.
       0.801
KRN99511.1
Hypothetical protein.
       0.773
KRN99515.1
Phage related protein minor tail protein.
       0.638
KRN99514.1
Bacteriophage Gp15 protein.
       0.566
KRN99516.1
Hypothetical protein.
       0.535
KRN99507.1
Hypothetical protein.
       0.518
KRN99505.1
Hypothetical protein.
       0.514
KRN99517.1
Hypothetical protein.
       0.513
Your Current Organism:
Lactobacillus pobuzihii
NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301
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