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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN99151.1Capsular polysaccharide biosynthesis protein. (258 aa)    
Predicted Functional Partners:
KRO01318.1
Tyrosine-protein kinase.
  
 0.994
KRO01319.1
Exopolysaccharide chain length regulator.
 
 
 0.960
KRN96803.1
Protein-tyrosine-phosphatase.
     
 0.788
KRN95899.1
Protein tyrosine serine phosphatase.
     
 0.788
KRO02629.1
Non-specific serine threonine protein kinase.
    
 
 0.699
KRO01325.1
Lipopolysaccharide synthesis sugar transferase.
 
  
 0.668
KRN99150.1
Cro CI family transcriptional regulator.
   
   0.658
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
    
   0.649
KRN99149.1
TerC faamily membrane protein.
       0.458
KRN99152.1
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
       0.437
Your Current Organism:
Lactobacillus pobuzihii
NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.