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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN99168.1GtcA family membrane protein. (130 aa)    
Predicted Functional Partners:
KRN99169.1
Family 2 glycosyltransferase.
 
 
 0.867
KRN99167.1
Hypothetical protein.
 
     0.688
KRN99170.1
Teichoic acid biosynthesis protein B.
  
    0.590
KRN99171.1
CDP-glycerol glycerophosphotransferase.
     
 0.588
KRO02102.1
Glycosyltransferase.
 
 
 0.491
KRN99172.1
Hypothetical protein.
 
    0.444
KRN97532.1
Hypothetical protein.
  
  
 0.431
KRN99173.1
Teichoic acid ABC transporter permease.
  
  
 0.426
KRO02074.1
Glycosyltransferase.
  
 
 0.406
Your Current Organism:
Lactobacillus pobuzihii
NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.