STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO02088.1Galactoside O-acetyltransferase. (189 aa)    
Predicted Functional Partners:
KRO02087.1
2,5-didehydrogluconate reductase.
  
    0.717
KRO02086.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.634
KRN98071.1
Cysteine synthase.
   
 0.598
KRO02085.1
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
 
   
 0.569
KRN98044.1
Dehydrogenase related protein.
 
 
 0.545
KRN98818.1
UDP-N-acetyl glucosamine-2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.515
KRN98073.1
Serine O-acetyltransferase.
  
 
 0.507
KRO02089.1
Oxidoreductase w.
  
    0.498
dapH
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
 
  
 
0.479
KRO01346.1
Hypothetical protein; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.475
Your Current Organism:
Lactobacillus pobuzihii
NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.