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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN98606.1Transcriptional regulator. (233 aa)    
Predicted Functional Partners:
KRN98513.1
Transcription regulator.
  
    0.781
KRN98554.1
GntR family transcriptional regulator.
  
    0.781
KRO01283.1
Hypothetical protein.
  
     0.774
KRN96807.1
GntR family transcriptional regulator.
  
     0.772
KRN95940.1
Trehalose operon transcriptional repressor.
  
     0.770
KRN98609.1
PTS system, IIC component.
 
    0.621
KRN98608.1
PTS system, IIB component.
 
    0.581
KRN98607.1
Beta-galactosidase (GH35); Belongs to the glycosyl hydrolase 35 family.
     
 0.531
KRN98610.1
PTS system, IID component.
 
    0.523
KRN96776.1
Hypothetical protein.
  
  
 0.496
Your Current Organism:
Lactobacillus pobuzihii
NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.