STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN98607.1Beta-galactosidase (GH35); Belongs to the glycosyl hydrolase 35 family. (590 aa)    
Predicted Functional Partners:
pyrB
Aspartate carbamoyltransferase catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
      0.864
carB
Carbamoyl phosphate synthase large subunit; Belongs to the CarB family.
 
      0.847
KRN98609.1
PTS system, IIC component.
 
   
 0.845
carA
Carbamoyl phosphate synthase small subunit; Belongs to the CarA family.
 
      0.842
KRN99544.1
Glycoside hydrolase clan GH-D.
 
  
 0.824
KRO01344.1
Beta-galactosidase.
  
 0.816
KRN95615.1
Galactose mutarotase.
  
 
 0.814
KRN99558.1
Aldose 1-epimerase.
  
 
 0.814
KRO01343.1
Family 2 glycoside hydrolase.
 
 0.804
KRN98608.1
PTS system, IIB component.
 
   
 0.794
Your Current Organism:
Lactobacillus pobuzihii
NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.