Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KRN98132.1Type IV prepilin leader peptidase. (250 aa)    
Predicted Functional Partners:
KRO01100.1
Competence protein ComEC.
  
  
 0.833
KRN97371.1
ComG operon protein 2.
 
  
 0.832
KRN97372.1
ComG operon protein 1.
 
 
 0.815
KRO02755.1
DNA processing protein.
  
  
 0.789
KRN97370.1
Hypothetical protein.
  
  
 0.773
KRO01098.1
ComE operon protein 1.
  
  
 0.768
KRN97441.1
ComF operon protein 1.
   
  
 0.684
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
     
 0.644
KRN96305.1
Competence protein transcription factor.
   
  
 0.600
cinA
Competence damage-inducible protein A; Belongs to the CinA family.
     
 0.596
Your Current Organism:
Lactobacillus pobuzihii
NCBI taxonomy Id: 449659
Other names: JCM 18084, KCTC 13174, L. pobuzihii, Lactobacillus pobuzihii Chen et al. 2010, NBRC 103219, RIFY 6501, strain E100301
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