STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000763375_00301Unannotated protein. (228 aa)    
Predicted Functional Partners:
GCA_000763375_00302
Unannotated protein.
 
   
 0.973
GCA_000763375_00354
Unannotated protein.
   
  0.741
GCA_000763375_00299
Unannotated protein.
 
    0.714
GCA_000763375_00303
Unannotated protein.
 
     0.705
GCA_000763375_00297
Unannotated protein.
 
    0.699
GCA_000763375_00289
Unannotated protein.
 
 
  0.655
GCA_000763375_00298
Unannotated protein.
 
     0.638
GCA_000763375_00300
Unannotated protein.
    
  0.619
GCA_000763375_00066
Unannotated protein.
  
 
 0.597
GCA_000763375_00286
Unannotated protein.
 
 
  0.557
Your Current Organism:
Microbacterium profundi
NCBI taxonomy Id: 450380
Other names: CGMCC 1.6777, JCM 14840, M. profundi, Microbacterium profundi Wu et al. 2008, Microbacterium sp. Shh49, strain Shh49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.