Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lade_0229 | acsA | Lade_0229 | Lade_0230 | D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. Belongs to the peptidase M15D family. | acetyl-CoA synthetase. | 0.773 |
Lade_0229 | echA8_2 | Lade_0229 | Lade_0233 | D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. Belongs to the peptidase M15D family. | enoyl-CoA hydratase. | 0.510 |
Lade_0229 | entS | Lade_0229 | Lade_0353 | D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. Belongs to the peptidase M15D family. | Drug:proton antiporter. | 0.437 |
Lade_0229 | legA | Lade_0229 | Lade_1685 | D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. Belongs to the peptidase M15D family. | Ankyrin-repeat containing protein, substrate of the Dot/Icm secretion system. | 0.440 |
Lade_0229 | mccA | Lade_0229 | Lade_0232 | D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. Belongs to the peptidase M15D family. | Acyl CoA carboxylase subunit alpha. | 0.705 |
Lade_0229 | mvaB | Lade_0229 | Lade_0231 | D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. Belongs to the peptidase M15D family. | hydroxymethylglutaryl-CoA lyase. | 0.773 |
acsA | Lade_0229 | Lade_0230 | Lade_0229 | acetyl-CoA synthetase. | D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. Belongs to the peptidase M15D family. | 0.773 |
acsA | echA8_2 | Lade_0230 | Lade_0233 | acetyl-CoA synthetase. | enoyl-CoA hydratase. | 0.704 |
acsA | mccA | Lade_0230 | Lade_0232 | acetyl-CoA synthetase. | Acyl CoA carboxylase subunit alpha. | 0.838 |
acsA | mvaB | Lade_0230 | Lade_0231 | acetyl-CoA synthetase. | hydroxymethylglutaryl-CoA lyase. | 0.920 |
echA8_2 | Lade_0229 | Lade_0233 | Lade_0229 | enoyl-CoA hydratase. | D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. Belongs to the peptidase M15D family. | 0.510 |
echA8_2 | acsA | Lade_0233 | Lade_0230 | enoyl-CoA hydratase. | acetyl-CoA synthetase. | 0.704 |
echA8_2 | mccA | Lade_0233 | Lade_0232 | enoyl-CoA hydratase. | Acyl CoA carboxylase subunit alpha. | 0.888 |
echA8_2 | mvaB | Lade_0233 | Lade_0231 | enoyl-CoA hydratase. | hydroxymethylglutaryl-CoA lyase. | 0.924 |
entS | Lade_0229 | Lade_0353 | Lade_0229 | Drug:proton antiporter. | D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. Belongs to the peptidase M15D family. | 0.437 |
legA | Lade_0229 | Lade_1685 | Lade_0229 | Ankyrin-repeat containing protein, substrate of the Dot/Icm secretion system. | D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. Belongs to the peptidase M15D family. | 0.440 |
mccA | Lade_0229 | Lade_0232 | Lade_0229 | Acyl CoA carboxylase subunit alpha. | D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. Belongs to the peptidase M15D family. | 0.705 |
mccA | acsA | Lade_0232 | Lade_0230 | Acyl CoA carboxylase subunit alpha. | acetyl-CoA synthetase. | 0.838 |
mccA | echA8_2 | Lade_0232 | Lade_0233 | Acyl CoA carboxylase subunit alpha. | enoyl-CoA hydratase. | 0.888 |
mccA | mvaB | Lade_0232 | Lade_0231 | Acyl CoA carboxylase subunit alpha. | hydroxymethylglutaryl-CoA lyase. | 0.955 |
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