Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lade_0341 | Lade_0342 | Lade_0341 | Lade_0342 | Putative transcriptional regulator. | Putative FlgJ-like protein. | 0.779 |
| Lade_0341 | def_3 | Lade_0341 | Lade_0343 | Putative transcriptional regulator. | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.773 |
| Lade_0341 | proP6 | Lade_0341 | Lade_0344 | Putative transcriptional regulator. | Proline/betaine transporter ProP6. | 0.775 |
| Lade_0342 | Lade_0341 | Lade_0342 | Lade_0341 | Putative FlgJ-like protein. | Putative transcriptional regulator. | 0.779 |
| Lade_0342 | def_3 | Lade_0342 | Lade_0343 | Putative FlgJ-like protein. | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.773 |
| Lade_0342 | proP6 | Lade_0342 | Lade_0344 | Putative FlgJ-like protein. | Proline/betaine transporter ProP6. | 0.775 |
| def_3 | Lade_0341 | Lade_0343 | Lade_0341 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Putative transcriptional regulator. | 0.773 |
| def_3 | Lade_0342 | Lade_0343 | Lade_0342 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Putative FlgJ-like protein. | 0.773 |
| def_3 | pdhB_1 | Lade_0343 | Lade_1061 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion. | 0.736 |
| def_3 | proP6 | Lade_0343 | Lade_0344 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Proline/betaine transporter ProP6. | 0.773 |
| def_3 | rplD | Lade_0343 | Lade_1390 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.753 |
| def_3 | rplI | Lade_0343 | Lade_1611 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.748 |
| def_3 | rplQ | Lade_0343 | Lade_1414 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L17. | 0.750 |
| def_3 | rplT | Lade_0343 | Lade_1826 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.771 |
| def_3 | rplU | Lade_0343 | Lade_0290 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.772 |
| def_3 | rplV | Lade_0343 | Lade_1394 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.766 |
| pdhB_1 | def_3 | Lade_1061 | Lade_0343 | 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion. | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.736 |
| proP6 | Lade_0341 | Lade_0344 | Lade_0341 | Proline/betaine transporter ProP6. | Putative transcriptional regulator. | 0.775 |
| proP6 | Lade_0342 | Lade_0344 | Lade_0342 | Proline/betaine transporter ProP6. | Putative FlgJ-like protein. | 0.775 |
| proP6 | def_3 | Lade_0344 | Lade_0343 | Proline/betaine transporter ProP6. | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.773 |
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