Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lade_0437 | Lade_0875 | Lade_0437 | Lade_0875 | Type IV pilus biogenesis protein PilP. | Type IV pre-pilin. | 0.791 |
Lade_0437 | Lade_1070 | Lade_0437 | Lade_1070 | Type IV pilus biogenesis protein PilP. | LysM domain-containing protein. | 0.898 |
Lade_0437 | Lade_1907 | Lade_0437 | Lade_1907 | Type IV pilus biogenesis protein PilP. | Hypothetical protein. | 0.640 |
Lade_0437 | fimV | Lade_0437 | Lade_0613 | Type IV pilus biogenesis protein PilP. | Transmembrane Tfp pilus assembly protein FimV. | 0.778 |
Lade_0437 | pilE | Lade_0437 | Lade_0425 | Type IV pilus biogenesis protein PilP. | type-IV pilin. | 0.742 |
Lade_0437 | pilM | Lade_0437 | Lade_0440 | Type IV pilus biogenesis protein PilP. | Tfp pilus assembly protein, ATPase PilM. | 0.978 |
Lade_0437 | pilN | Lade_0437 | Lade_0439 | Type IV pilus biogenesis protein PilP. | Tfp pilus assembly protein PilN. | 0.993 |
Lade_0437 | pilO | Lade_0437 | Lade_0438 | Type IV pilus biogenesis protein PilP. | Tfp pilus assembly protein PilO. | 0.993 |
Lade_0437 | pilQ_1 | Lade_0437 | Lade_0436 | Type IV pilus biogenesis protein PilP. | Type IV pilus (Tfp) assembly protein PilQ. | 0.999 |
Lade_0437 | pilZ | Lade_0437 | Lade_0815 | Type IV pilus biogenesis protein PilP. | Type 4 fimbrial biogenesis protein PilZ. | 0.802 |
Lade_0875 | Lade_0437 | Lade_0875 | Lade_0437 | Type IV pre-pilin. | Type IV pilus biogenesis protein PilP. | 0.791 |
Lade_0875 | Lade_1070 | Lade_0875 | Lade_1070 | Type IV pre-pilin. | LysM domain-containing protein. | 0.718 |
Lade_0875 | fimV | Lade_0875 | Lade_0613 | Type IV pre-pilin. | Transmembrane Tfp pilus assembly protein FimV. | 0.634 |
Lade_0875 | pilE | Lade_0875 | Lade_0425 | Type IV pre-pilin. | type-IV pilin. | 0.837 |
Lade_0875 | pilM | Lade_0875 | Lade_0440 | Type IV pre-pilin. | Tfp pilus assembly protein, ATPase PilM. | 0.751 |
Lade_0875 | pilN | Lade_0875 | Lade_0439 | Type IV pre-pilin. | Tfp pilus assembly protein PilN. | 0.786 |
Lade_0875 | pilO | Lade_0875 | Lade_0438 | Type IV pre-pilin. | Tfp pilus assembly protein PilO. | 0.777 |
Lade_0875 | pilQ_1 | Lade_0875 | Lade_0436 | Type IV pre-pilin. | Type IV pilus (Tfp) assembly protein PilQ. | 0.633 |
Lade_0875 | pilZ | Lade_0875 | Lade_0815 | Type IV pre-pilin. | Type 4 fimbrial biogenesis protein PilZ. | 0.748 |
Lade_1070 | Lade_0437 | Lade_1070 | Lade_0437 | LysM domain-containing protein. | Type IV pilus biogenesis protein PilP. | 0.898 |
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