Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
Lade_0801Transglutaminase. (669 aa)    
Predicted Functional Partners:
Lade_0800
Transmembrane protein.
 
  
 0.971
Lade_0799
Methanol dehydrogenase regulatory protein.
 
     0.931
Lade_1070
LysM domain-containing protein.
  
     0.729
pilN
Tfp pilus assembly protein PilN.
  
     0.719
pilM
Tfp pilus assembly protein, ATPase PilM.
  
     0.715
pilO
Tfp pilus assembly protein PilO.
  
     0.714
Lade_0437
Type IV pilus biogenesis protein PilP.
  
     0.711
pilZ
Type 4 fimbrial biogenesis protein PilZ.
  
     0.701
Lade_0169
Type IV fimbrial biogenesis PilY1-like protein.
  
     0.686
pilQ_1
Type IV pilus (Tfp) assembly protein PilQ.
  
     0.669
Your Current Organism:
Legionella adelaidensis
NCBI taxonomy Id: 45056
Other names: ATCC 49625, CCUG 31231 A, CIP 103645, DSM 19888, L. adelaidensis, NCTC 12735
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