Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rcp1_3Two-component response regulator. (149 aa)    
Predicted Functional Partners:
cph1_3
Two-component sensor histidine kinase.
 
 
 
 0.889
cph1_1
Sensory box histidine kinase.
 
 
 
 0.888
cph1_2
Sensory box histidine kinase.
 
 
 
 0.884
arcB_1
Sensory box histidine kinase/response regulator.
 
 
 0.876
luxQ
Sensor histidine kinase.
 
 
 0.875
arcB_3
Sensory box histidine kinase/response regulator.
 
 
 0.875
arcB_4
Sensory histidine-kinase / response regulator.
 
 
 0.872
Lade_1576
Sensory histidine-kinase / response regulator.
  
 
 0.840
arcB_5
Sensory box histidine kinase/response regulator.
 
 
 0.647
fixL
Signal transduction histidine kinase.
 
 
 0.624
Your Current Organism:
Legionella adelaidensis
NCBI taxonomy Id: 45056
Other names: ATCC 49625, CCUG 31231 A, CIP 103645, DSM 19888, L. adelaidensis, NCTC 12735
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