Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lade_0969TRP containing protein. (266 aa)    
Predicted Functional Partners:
pgaC
Glycosyl transferase family protein.
 
    0.904
Lade_0968
HEAT repeat protein.
       0.778
galE_1
NAD dependent epimerase/dehydratase family protein.
       0.773
rfbE
NAD-dependent epimerase/dehydratase.
       0.773
capL
Protein capL; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.773
Lade_0972
Hypothetical protein.
       0.773
phbC
Polyhydroxyalkanoic synthase.
       0.757
Lade_1337
N-acetylmuramoyl-L-alanine amidase.
  
     0.666
ccmF
Cytochrome C-type biogenesis protein CcmF.
  
 
 0.627
Lade_0973
Transporting ATPase.
       0.570
Your Current Organism:
Legionella adelaidensis
NCBI taxonomy Id: 45056
Other names: ATCC 49625, CCUG 31231 A, CIP 103645, DSM 19888, L. adelaidensis, NCTC 12735
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