Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lade_0350 | Lade_1034 | Lade_0350 | Lade_1034 | Cytidylate kinase. | GNAT family acetyltransferase. | 0.534 |
Lade_0350 | Lade_1694 | Lade_0350 | Lade_1694 | Cytidylate kinase. | Hypothetical protein. | 0.457 |
Lade_1023 | Lade_1034 | Lade_1023 | Lade_1034 | Type IV secretory protein VirB4 component. | GNAT family acetyltransferase. | 0.420 |
Lade_1023 | Lade_1036 | Lade_1023 | Lade_1036 | Type IV secretory protein VirB4 component. | Antirestriction protein. | 0.771 |
Lade_1023 | Lade_1694 | Lade_1023 | Lade_1694 | Type IV secretory protein VirB4 component. | Hypothetical protein. | 0.505 |
Lade_1033 | Lade_1034 | Lade_1033 | Lade_1034 | Aminoglycoside 3-N-acetyltransferase. | GNAT family acetyltransferase. | 0.682 |
Lade_1033 | Lade_1556 | Lade_1033 | Lade_1556 | Aminoglycoside 3-N-acetyltransferase. | Putative aminoglycoside phosphotransferase. | 0.607 |
Lade_1034 | Lade_0350 | Lade_1034 | Lade_0350 | GNAT family acetyltransferase. | Cytidylate kinase. | 0.534 |
Lade_1034 | Lade_1023 | Lade_1034 | Lade_1023 | GNAT family acetyltransferase. | Type IV secretory protein VirB4 component. | 0.420 |
Lade_1034 | Lade_1033 | Lade_1034 | Lade_1033 | GNAT family acetyltransferase. | Aminoglycoside 3-N-acetyltransferase. | 0.682 |
Lade_1034 | Lade_1036 | Lade_1034 | Lade_1036 | GNAT family acetyltransferase. | Antirestriction protein. | 0.413 |
Lade_1034 | Lade_1499 | Lade_1034 | Lade_1499 | GNAT family acetyltransferase. | Hypothetical protein. | 0.470 |
Lade_1034 | Lade_1556 | Lade_1034 | Lade_1556 | GNAT family acetyltransferase. | Putative aminoglycoside phosphotransferase. | 0.639 |
Lade_1034 | Lade_1694 | Lade_1034 | Lade_1694 | GNAT family acetyltransferase. | Hypothetical protein. | 0.765 |
Lade_1034 | Lade_1884 | Lade_1034 | Lade_1884 | GNAT family acetyltransferase. | Hypothetical protein. | 0.669 |
Lade_1034 | kefA | Lade_1034 | Lade_0330 | GNAT family acetyltransferase. | Potassium efflux system KefA. | 0.448 |
Lade_1034 | legA | Lade_1034 | Lade_1685 | GNAT family acetyltransferase. | Ankyrin-repeat containing protein, substrate of the Dot/Icm secretion system. | 0.543 |
Lade_1036 | Lade_1023 | Lade_1036 | Lade_1023 | Antirestriction protein. | Type IV secretory protein VirB4 component. | 0.771 |
Lade_1036 | Lade_1034 | Lade_1036 | Lade_1034 | Antirestriction protein. | GNAT family acetyltransferase. | 0.413 |
Lade_1499 | Lade_1034 | Lade_1499 | Lade_1034 | Hypothetical protein. | GNAT family acetyltransferase. | 0.470 |
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