Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lade_1145 | hemC | Lade_1145 | Lade_1146 | Sensor protein LuxN. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.620 |
Lade_1145 | hemD | Lade_1145 | Lade_1147 | Sensor protein LuxN. | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.584 |
Lade_1145 | hemX | Lade_1145 | Lade_1148 | Sensor protein LuxN. | Uroporphyrinogen III methylase HemX. | 0.586 |
Lade_1145 | hemY | Lade_1145 | Lade_1149 | Sensor protein LuxN. | Protoporphyrinogen oxidase. | 0.587 |
Lade_1610 | Lade_1923 | Lade_1610 | Lade_1923 | Membrane protein. | SCP-2 sterol transfer family protein. | 0.631 |
Lade_1610 | hemX | Lade_1610 | Lade_1148 | Membrane protein. | Uroporphyrinogen III methylase HemX. | 0.458 |
Lade_1610 | hemY | Lade_1610 | Lade_1149 | Membrane protein. | Protoporphyrinogen oxidase. | 0.574 |
Lade_1610 | lolB | Lade_1610 | Lade_1107 | Membrane protein. | Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. | 0.534 |
Lade_1610 | lpoA | Lade_1610 | Lade_2116 | Membrane protein. | Lipoprotein. | 0.547 |
Lade_1923 | Lade_1610 | Lade_1923 | Lade_1610 | SCP-2 sterol transfer family protein. | Membrane protein. | 0.631 |
Lade_1923 | hemY | Lade_1923 | Lade_1149 | SCP-2 sterol transfer family protein. | Protoporphyrinogen oxidase. | 0.599 |
Lade_1923 | lolB | Lade_1923 | Lade_1107 | SCP-2 sterol transfer family protein. | Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. | 0.433 |
Lade_1923 | lpoA | Lade_1923 | Lade_2116 | SCP-2 sterol transfer family protein. | Lipoprotein. | 0.710 |
dsbB | hemX | Lade_1141 | Lade_1148 | Disulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | Uroporphyrinogen III methylase HemX. | 0.534 |
dsbB | hemY | Lade_1141 | Lade_1149 | Disulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | Protoporphyrinogen oxidase. | 0.556 |
dsbB | lolB | Lade_1141 | Lade_1107 | Disulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. | Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. | 0.547 |
hemC | Lade_1145 | Lade_1146 | Lade_1145 | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | Sensor protein LuxN. | 0.620 |
hemC | hemD | Lade_1146 | Lade_1147 | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. | 0.994 |
hemC | hemX | Lade_1146 | Lade_1148 | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | Uroporphyrinogen III methylase HemX. | 0.925 |
hemC | hemY | Lade_1146 | Lade_1149 | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | Protoporphyrinogen oxidase. | 0.818 |
page 1 of 3