STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lasBVirulence metalloprotease; Extracellular zinc metalloprotease. (548 aa)    
Predicted Functional Partners:
Lade_2114
Metalloproteinase-like protein.
 
 
 0.876
Lade_1324
Hypothetical protein.
   
 0.858
Lade_1600
Hypothetical protein.
   
 0.858
Lade_1357
Rossmann-like domain protein.
       0.613
Lade_2015
Hypothetical protein.
    
 0.587
Lade_1356
Spermidine synthase.
       0.556
amiB
N-acetylmuramoyl-L-alanine amidase.
    
 
 0.529
tphB
Proline/glycine betaine transporter-like protein.
       0.515
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
       0.496
pksJ
Polyketide synthase module.
  
  
 0.484
Your Current Organism:
Legionella adelaidensis
NCBI taxonomy Id: 45056
Other names: ATCC 49625, CCUG 31231 A, CIP 103645, DSM 19888, L. adelaidensis, NCTC 12735
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