Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lade_0752 | Lade_1375 | Lade_0752 | Lade_1375 | Hypothetical protein. | TPR repeat containing protein. | 0.558 |
Lade_0752 | rna | Lade_0752 | Lade_1372 | Hypothetical protein. | Ribonuclease, T2 family; Belongs to the RNase T2 family. | 0.408 |
Lade_1371 | Lade_1373 | Lade_1371 | Lade_1373 | Hypothetical protein. | Sulfate transporter. | 0.443 |
Lade_1371 | rna | Lade_1371 | Lade_1372 | Hypothetical protein. | Ribonuclease, T2 family; Belongs to the RNase T2 family. | 0.703 |
Lade_1373 | Lade_1371 | Lade_1373 | Lade_1371 | Sulfate transporter. | Hypothetical protein. | 0.443 |
Lade_1373 | Lade_1374 | Lade_1373 | Lade_1374 | Sulfate transporter. | KQDN repeat-containing protein. | 0.449 |
Lade_1373 | Lade_1375 | Lade_1373 | Lade_1375 | Sulfate transporter. | TPR repeat containing protein. | 0.449 |
Lade_1373 | rna | Lade_1373 | Lade_1372 | Sulfate transporter. | Ribonuclease, T2 family; Belongs to the RNase T2 family. | 0.497 |
Lade_1374 | Lade_1373 | Lade_1374 | Lade_1373 | KQDN repeat-containing protein. | Sulfate transporter. | 0.449 |
Lade_1374 | Lade_1375 | Lade_1374 | Lade_1375 | KQDN repeat-containing protein. | TPR repeat containing protein. | 0.808 |
Lade_1374 | rna | Lade_1374 | Lade_1372 | KQDN repeat-containing protein. | Ribonuclease, T2 family; Belongs to the RNase T2 family. | 0.500 |
Lade_1375 | Lade_0752 | Lade_1375 | Lade_0752 | TPR repeat containing protein. | Hypothetical protein. | 0.558 |
Lade_1375 | Lade_1373 | Lade_1375 | Lade_1373 | TPR repeat containing protein. | Sulfate transporter. | 0.449 |
Lade_1375 | Lade_1374 | Lade_1375 | Lade_1374 | TPR repeat containing protein. | KQDN repeat-containing protein. | 0.808 |
Lade_1375 | rna | Lade_1375 | Lade_1372 | TPR repeat containing protein. | Ribonuclease, T2 family; Belongs to the RNase T2 family. | 0.415 |
Lade_1479 | rna | Lade_1479 | Lade_1372 | Hypothetical protein. | Ribonuclease, T2 family; Belongs to the RNase T2 family. | 0.450 |
lidK | rna | Lade_1616 | Lade_1372 | (CDP-alcohol) phosphatidyltransferase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Ribonuclease, T2 family; Belongs to the RNase T2 family. | 0.529 |
rna | Lade_0752 | Lade_1372 | Lade_0752 | Ribonuclease, T2 family; Belongs to the RNase T2 family. | Hypothetical protein. | 0.408 |
rna | Lade_1371 | Lade_1372 | Lade_1371 | Ribonuclease, T2 family; Belongs to the RNase T2 family. | Hypothetical protein. | 0.703 |
rna | Lade_1373 | Lade_1372 | Lade_1373 | Ribonuclease, T2 family; Belongs to the RNase T2 family. | Sulfate transporter. | 0.497 |
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