Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lade_1834 | Lade_1835 | Lade_1834 | Lade_1835 | Cupin domain protein. | Acid-resistance membrane protein. | 0.596 |
Lade_1834 | dhbF | Lade_1834 | Lade_2081 | Cupin domain protein. | Peptide synthetase, non-ribosomal; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.535 |
Lade_1834 | galU | Lade_1834 | Lade_0718 | Cupin domain protein. | Glucose-1-phosphate uridylyltransferase. | 0.407 |
Lade_1834 | metG | Lade_1834 | Lade_2134 | Cupin domain protein. | Methionyl tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.456 |
Lade_1834 | pgi | Lade_1834 | Lade_0717 | Cupin domain protein. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.409 |
Lade_1834 | ugd | Lade_1834 | Lade_0447 | Cupin domain protein. | UDP-glucose 6-dehydrogenase. | 0.439 |
Lade_1834 | ytfH | Lade_1834 | Lade_1833 | Cupin domain protein. | Putative transcriptional regulator. | 0.653 |
Lade_1835 | Lade_1834 | Lade_1835 | Lade_1834 | Acid-resistance membrane protein. | Cupin domain protein. | 0.596 |
dhbF | Lade_1834 | Lade_2081 | Lade_1834 | Peptide synthetase, non-ribosomal; Belongs to the ATP-dependent AMP-binding enzyme family. | Cupin domain protein. | 0.535 |
dhbF | metG | Lade_2081 | Lade_2134 | Peptide synthetase, non-ribosomal; Belongs to the ATP-dependent AMP-binding enzyme family. | Methionyl tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.819 |
dhbF | ugd | Lade_2081 | Lade_0447 | Peptide synthetase, non-ribosomal; Belongs to the ATP-dependent AMP-binding enzyme family. | UDP-glucose 6-dehydrogenase. | 0.828 |
galU | Lade_1834 | Lade_0718 | Lade_1834 | Glucose-1-phosphate uridylyltransferase. | Cupin domain protein. | 0.407 |
galU | pgi | Lade_0718 | Lade_0717 | Glucose-1-phosphate uridylyltransferase. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.771 |
galU | ugd | Lade_0718 | Lade_0447 | Glucose-1-phosphate uridylyltransferase. | UDP-glucose 6-dehydrogenase. | 0.863 |
metG | Lade_1834 | Lade_2134 | Lade_1834 | Methionyl tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Cupin domain protein. | 0.456 |
metG | dhbF | Lade_2134 | Lade_2081 | Methionyl tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Peptide synthetase, non-ribosomal; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.819 |
metG | pgi | Lade_2134 | Lade_0717 | Methionyl tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.445 |
pgi | Lade_1834 | Lade_0717 | Lade_1834 | Glucose-6-phosphate isomerase; Belongs to the GPI family. | Cupin domain protein. | 0.409 |
pgi | galU | Lade_0717 | Lade_0718 | Glucose-6-phosphate isomerase; Belongs to the GPI family. | Glucose-1-phosphate uridylyltransferase. | 0.771 |
pgi | metG | Lade_0717 | Lade_2134 | Glucose-6-phosphate isomerase; Belongs to the GPI family. | Methionyl tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.445 |
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