Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lade_1908Fimbrial assembly protein (PilN). (206 aa)    
Predicted Functional Partners:
Lade_1907
Hypothetical protein.
  
 
 0.942
pilO
Tfp pilus assembly protein PilO.
  
 
 0.829
pilQ_1
Type IV pilus (Tfp) assembly protein PilQ.
  
 
 0.813
lspE_2
Type II protein secretion ATPase LspE.
   
 
 0.812
pilQ_2
Type IV pilus (Tfp) assembly protein PilQ.
     
 0.751
pilM
Tfp pilus assembly protein, ATPase PilM.
  
 
 0.730
Lade_1910
Hypothetical protein.
  
    0.712
Lade_1909
Hypothetical protein.
       0.708
Lade_0437
Type IV pilus biogenesis protein PilP.
  
  
 0.701
Lade_1912
Hypothetical protein.
       0.677
Your Current Organism:
Legionella adelaidensis
NCBI taxonomy Id: 45056
Other names: ATCC 49625, CCUG 31231 A, CIP 103645, DSM 19888, L. adelaidensis, NCTC 12735
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