STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lade_1983Prophage CP4-57 regulatory protein AlpA. (69 aa)    
Predicted Functional Partners:
intS
Integrase; Belongs to the 'phage' integrase family.
 
   
 0.859
Lade_1985
Hypothetical protein.
 
     0.811
Lade_1984
Hypothetical protein.
       0.775
int
Integrase; Belongs to the 'phage' integrase family.
 
   
 0.736
Lade_1982
Hypothetical protein.
       0.538
Lade_1981
FRG domain protein.
 
     0.520
Your Current Organism:
Legionella adelaidensis
NCBI taxonomy Id: 45056
Other names: ATCC 49625, CCUG 31231 A, CIP 103645, DSM 19888, L. adelaidensis, NCTC 12735
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.