Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lade_0743 | Lade_2190 | Lade_0743 | Lade_2190 | Mannose-1-phosphate guanyltransferase. | Putative phosphotransferase. | 0.436 |
Lade_0743 | glmU | Lade_0743 | Lade_2123 | Mannose-1-phosphate guanyltransferase. | Glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.488 |
Lade_0743 | gph | Lade_0743 | Lade_0116 | Mannose-1-phosphate guanyltransferase. | Hydrolase. | 0.555 |
Lade_0743 | rfbA | Lade_0743 | Lade_2138 | Mannose-1-phosphate guanyltransferase. | Phosphomannose isomerase GDP mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.815 |
Lade_2189 | Lade_2190 | Lade_2189 | Lade_2190 | Nucleotidyltransferase. | Putative phosphotransferase. | 0.978 |
Lade_2189 | glmU | Lade_2189 | Lade_2123 | Nucleotidyltransferase. | Glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.407 |
Lade_2189 | lptD | Lade_2189 | Lade_2191 | Nucleotidyltransferase. | Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.505 |
Lade_2189 | rfbA | Lade_2189 | Lade_2138 | Nucleotidyltransferase. | Phosphomannose isomerase GDP mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.814 |
Lade_2190 | Lade_0743 | Lade_2190 | Lade_0743 | Putative phosphotransferase. | Mannose-1-phosphate guanyltransferase. | 0.436 |
Lade_2190 | Lade_2189 | Lade_2190 | Lade_2189 | Putative phosphotransferase. | Nucleotidyltransferase. | 0.978 |
Lade_2190 | ampG | Lade_2190 | Lade_0897 | Putative phosphotransferase. | AmpG protein. | 0.423 |
Lade_2190 | bglX | Lade_2190 | Lade_0400 | Putative phosphotransferase. | Glycosyl hydrolase. | 0.552 |
Lade_2190 | glmU | Lade_2190 | Lade_2123 | Putative phosphotransferase. | Glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.596 |
Lade_2190 | gph | Lade_2190 | Lade_0116 | Putative phosphotransferase. | Hydrolase. | 0.632 |
Lade_2190 | lptD | Lade_2190 | Lade_2191 | Putative phosphotransferase. | Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.585 |
Lade_2190 | mpl | Lade_2190 | Lade_0166 | Putative phosphotransferase. | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily. | 0.475 |
Lade_2190 | rfbA | Lade_2190 | Lade_2138 | Putative phosphotransferase. | Phosphomannose isomerase GDP mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.718 |
Lade_2190 | ybbD | Lade_2190 | Lade_1137 | Putative phosphotransferase. | Glycosyl hydrolase family protein. | 0.552 |
ampG | Lade_2190 | Lade_0897 | Lade_2190 | AmpG protein. | Putative phosphotransferase. | 0.423 |
bglX | Lade_2190 | Lade_0400 | Lade_2190 | Glycosyl hydrolase. | Putative phosphotransferase. | 0.552 |
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