Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lgee_0022Putative transmembrane protein. (249 aa)    
Predicted Functional Partners:
Lgee_0021
Putative ABC transport system permease.
  
 
 0.955
Lgee_0023
Hypothetical protein.
 
     0.948
ttg2D
Toluene tolerance protein Ttg2D.
 
 
 0.875
ttg2A
Toluene tolerance ABC transporter ATP binding protein Ttg2A.
  
 
 0.785
Lgee_2262
ABC transporter ATP binding protein.
  
 
 0.785
Lgee_2260
Transport protein.
  
   0.761
ttg2B
Toluene tolerance protein Ttg2B.
  
 
 0.740
Lgee_2263
ABC transporter permease.
  
 
 0.740
Lgee_0024
Sensory box histidine kinase/response regulator.
   
   0.646
ThpR
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.513
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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