STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_0118Aminotransferase WecE; Belongs to the DegT/DnrJ/EryC1 family. (410 aa)    
Predicted Functional Partners:
iolG_1
Myo-inositol-2-dehydrogenase.
  
  
 0.920
Lgee_1630
Putative nucleoside-diphosphate sugar epimerase.
 
  
 0.908
pglC
Undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase.
  
 0.863
wecB
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.855
Lgee_0120
Glycosyltransferase, group 1 family.
 
  
 0.789
Lgee_1345
Nucleotidyltransferase.
  
  
 0.785
Lgee_1732
Peptide synthetase, non-ribosomal.
  
 
 0.712
Lgee_0977
Oxidoreductase.
 
  
 0.709
iolG_2
Myo-inositol-2-dehydrogenase.
 
  
 0.664
Lgee_0126
Chloramphenicol acetyltransferase.
 
   0.617
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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