STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_0200Hypothetical protein. (164 aa)    
Predicted Functional Partners:
Lgee_0196
Hypothetical protein.
 
     0.954
Lgee_0198
Bile acid beta-glucosidase.
 
     0.954
Lgee_0197
Hypothetical protein.
 
     0.953
rhsA
Putative deoxyribonuclease RhsA.
  
  
 0.934
Lgee_0189
Membrane protein.
 
     0.912
Lgee_0190
Hypothetical protein.
 
     0.912
Lgee_0188
Hypothetical protein.
 
     0.885
Lgee_0184
Membrane protein.
 
     0.884
Lgee_0185
Tfp pilus assembly, pilus retraction ATPase PilT.
 
     0.884
Lgee_0186
TraU protein.
 
     0.884
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.