Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgee_0237 | Lgee_0238 | Lgee_0237 | Lgee_0238 | Hypothetical protein. | Membrane-associated HD superfamily hydrolase. | 0.718 |
Lgee_0237 | Lgee_1011 | Lgee_0237 | Lgee_1011 | Hypothetical protein. | Protein IcmO (DotL). | 0.743 |
Lgee_0237 | Lgee_1839 | Lgee_0237 | Lgee_1839 | Hypothetical protein. | IcmJ protein. | 0.743 |
Lgee_0237 | icmP | Lgee_0237 | Lgee_1012 | Hypothetical protein. | IcmP protein. | 0.743 |
Lgee_0237 | lpxH | Lgee_0237 | Lgee_0239 | Hypothetical protein. | UDP-2,3-diacylglucosamine hydrolase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.718 |
Lgee_0237 | minC | Lgee_0237 | Lgee_0240 | Hypothetical protein. | Cell division inhibitor MinC (septum placement); Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family. | 0.718 |
Lgee_0237 | ndk | Lgee_0237 | Lgee_0236 | Hypothetical protein. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.584 |
Lgee_0237 | traD | Lgee_0237 | Lgee_0181 | Hypothetical protein. | Conjugative coupling factor TraD. | 0.602 |
Lgee_0237 | traG_1 | Lgee_0237 | Lgee_0377 | Hypothetical protein. | Conjugal transfer coupling protein TraG. | 0.602 |
Lgee_0237 | traG_2 | Lgee_0237 | Lgee_0505 | Hypothetical protein. | Conjugal transfer coupling protein TraG. | 0.602 |
Lgee_0238 | Lgee_0237 | Lgee_0238 | Lgee_0237 | Membrane-associated HD superfamily hydrolase. | Hypothetical protein. | 0.718 |
Lgee_0238 | lpxH | Lgee_0238 | Lgee_0239 | Membrane-associated HD superfamily hydrolase. | UDP-2,3-diacylglucosamine hydrolase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.773 |
Lgee_0238 | minC | Lgee_0238 | Lgee_0240 | Membrane-associated HD superfamily hydrolase. | Cell division inhibitor MinC (septum placement); Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family. | 0.773 |
Lgee_0238 | ndk | Lgee_0238 | Lgee_0236 | Membrane-associated HD superfamily hydrolase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.481 |
Lgee_1011 | Lgee_0237 | Lgee_1011 | Lgee_0237 | Protein IcmO (DotL). | Hypothetical protein. | 0.743 |
Lgee_1011 | Lgee_1839 | Lgee_1011 | Lgee_1839 | Protein IcmO (DotL). | IcmJ protein. | 0.828 |
Lgee_1011 | icmP | Lgee_1011 | Lgee_1012 | Protein IcmO (DotL). | IcmP protein. | 0.990 |
Lgee_1839 | Lgee_0237 | Lgee_1839 | Lgee_0237 | IcmJ protein. | Hypothetical protein. | 0.743 |
Lgee_1839 | Lgee_1011 | Lgee_1839 | Lgee_1011 | IcmJ protein. | Protein IcmO (DotL). | 0.828 |
Lgee_1839 | icmP | Lgee_1839 | Lgee_1012 | IcmJ protein. | IcmP protein. | 0.829 |
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