Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgee_1771 | terC | Lgee_1771 | Lgee_0269 | Mg2+ and Co2+ transporter CorC. | Membrane protein TerC; Possibly involved in tellurium resistance. | 0.584 |
folK | hemJ | Lgee_0271 | Lgee_0268 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase. | Transmembrane protein. | 0.577 |
folK | pcnB | Lgee_0271 | Lgee_0270 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase. | poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.948 |
folK | terC | Lgee_0271 | Lgee_0269 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase. | Membrane protein TerC; Possibly involved in tellurium resistance. | 0.577 |
hemJ | folK | Lgee_0268 | Lgee_0271 | Transmembrane protein. | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase. | 0.577 |
hemJ | pcnB | Lgee_0268 | Lgee_0270 | Transmembrane protein. | poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.577 |
hemJ | terC | Lgee_0268 | Lgee_0269 | Transmembrane protein. | Membrane protein TerC; Possibly involved in tellurium resistance. | 0.805 |
pcnB | folK | Lgee_0270 | Lgee_0271 | poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase. | 0.948 |
pcnB | hemJ | Lgee_0270 | Lgee_0268 | poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Transmembrane protein. | 0.577 |
pcnB | terC | Lgee_0270 | Lgee_0269 | poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Membrane protein TerC; Possibly involved in tellurium resistance. | 0.577 |
terC | Lgee_1771 | Lgee_0269 | Lgee_1771 | Membrane protein TerC; Possibly involved in tellurium resistance. | Mg2+ and Co2+ transporter CorC. | 0.584 |
terC | folK | Lgee_0269 | Lgee_0271 | Membrane protein TerC; Possibly involved in tellurium resistance. | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase. | 0.577 |
terC | hemJ | Lgee_0269 | Lgee_0268 | Membrane protein TerC; Possibly involved in tellurium resistance. | Transmembrane protein. | 0.805 |
terC | pcnB | Lgee_0269 | Lgee_0270 | Membrane protein TerC; Possibly involved in tellurium resistance. | poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.577 |