Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trbJ_1Conjugal transfer protein TrbJ. (246 aa)    
Predicted Functional Partners:
trbI_1
Conjugal transfer protein trbI.
 
 
 
 0.944
trbD_1
Conjugal transfer protein trbD.
 
     0.941
trbE_1
Conjugal transfer protein trbE precursor.
 
 
 
 0.936
trbF_1
Conjugal transfer protein trbF.
 
     0.934
trbG_1
Conjugal transfer protein trbG precursor.
 
   
 0.931
trbL_1
Conjugal transfer protein trbL.
 
   
 0.894
traF_1
Conjugal transfer protein TraF.
 
     0.881
traC_1
DNA primase TraC.
 
     0.857
traG_1
Conjugal transfer coupling protein TraG.
 
   
 0.844
virB_1
LvhB11.
 
   
 0.816
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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