Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traG_1Conjugal transfer coupling protein TraG. (629 aa)    
Predicted Functional Partners:
traF_1
Conjugal transfer protein TraF.
 
     0.952
trbL_1
Conjugal transfer protein trbL.
 
     0.945
trbI_1
Conjugal transfer protein trbI.
 
 
 
 0.910
traG_2
Conjugal transfer coupling protein TraG.
  
  
 
0.901
trbE_1
Conjugal transfer protein trbE precursor.
 
  
 0.892
trbG_1
Conjugal transfer protein trbG precursor.
 
   
 0.890
traC_1
DNA primase TraC.
 
    0.886
trbD_1
Conjugal transfer protein trbD.
 
     0.882
virB_1
LvhB11.
 
   
 0.881
trbF_1
Conjugal transfer protein trbF.
 
     0.879
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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