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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traC_1DNA primase TraC. (730 aa)    
Predicted Functional Partners:
trbL_1
Conjugal transfer protein trbL.
 
     0.897
traG_1
Conjugal transfer coupling protein TraG.
 
    0.892
traF_1
Conjugal transfer protein TraF.
 
     0.892
trbD_1
Conjugal transfer protein trbD.
 
     0.866
trbF_1
Conjugal transfer protein trbF.
 
     0.864
trbJ_1
Conjugal transfer protein TrbJ.
 
     0.864
trbG_1
Conjugal transfer protein trbG precursor.
 
     0.862
trbI_1
Conjugal transfer protein trbI.
 
     0.860
trbE_1
Conjugal transfer protein trbE precursor.
 
     0.855
traI_1
TraI protein.
 
     0.813
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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